↑ Stoeck T, Kasper J, Bunge J, Leslin C, Ilyin V, Epstein S (2007). ↑ Siddall ME, Trontelj P, Utevsky SY, Nkamany M, Macdonald KS (2007). ↑ Baxter SW, Papa R, Chamberlain N, Humphray SJ, Joron M, Morrison C, ffrench-Constant RH, McMillan WO, Jiggins CD (2008). Antimicrob Agents Chemother 49: 1477-1482. ↑ van Amsterdam K, Bart A, van der Ende A (2005). ↑ Pignone M, Greth KM, Cooper J, Emerson D, Tang J (2006). Marc Deltre, National University of Ireland Galway, Ireland Marc's research is focused on farmer-plant interactions and their genetic and evolutionary consequences for crop plants. ↑ McCullough BJ, Adams JC, Shilling DJ, Feeney MP, Sie KCY, Tempel BL (2007). CodonCode Aligner is used to align, edit and BLAST-search hundreds of samplesfor phylogenetic analysis. ↑ Tremblay K, Lemire M, Potvin C, Tremblay A, Hunninghake GM, Raby BA, Hudson TJ, Perez-Iratxeta C, Andrade-Navarro MA, Laprise C (2008). ↑ Andersson LS, Juras R, Ramsey DT, Eason-Butler J, Ewart S, Cothran G, Lindgren G (2008). ↑ Bart A, van Passel MWJ, van Amsterdam K, van der Ende A (2005). ↑ Behnke A, Bunge J, Barger K, Breiner H, Alla V, Stoeck T (2006). ↑ Pendley CJ, Becker EA, Karl JA, Blasky AJ, Wiseman RW, Hughes AL, O‚O'Connor SL, O‚O'Connor DH (2008). ↑ Mild M, Esbjörnsson J, Fenyö EM, Medstrand P (2007). ↑ Calis JC, Rotteveel HP, van der Kuyl AC, Zorgdrager F, Kachala D, van Hensbroek MB, Cornelissen M (2008). ↑ Bailey JR, Sedaghat AR, Kieffer T, Brennan T, Lee PK, Wind-Rotolo M, Haggerty CM, Kamireddi AR, Liu Y, Lee J, Persaud D, Gallant JE, Cofrancesco J, Quinn TC, Wilke CO, Ray SC, Siliciano JD, Nettles RE, Siliciano RF (2006). Citations cover a wide variety of biomedical research areas, including HIV research,, biogeography and environmental biology, DNA methylation studies, genetic diseases, clinical microbiology, and evolution research and phylogenetics. In April 2009, CodonCode Aligner had been cited in more than 400 scientific publications. #CODONCODE ALIGNER BLAST SEARCH NOT OPENING FULL VERSION#
The first beta version of CodonCode Aligner was released in April 2003, followed by the first full version in June 2003.
Support for Phred, Phrap, ClustalW, and MUSCLE. Restriction analysis - find and view restriction cut sites. 
Analysis of heterozygous insertions and deletions. Mutation detection, including detection of heterozygous single-nucleotide polymorphism. 
Alignment of contigs to each other with ClustalW, MUSCLE, or built-in algorithms.Aligning cDNA against genomic templates.Chromatogram editing, end clipping, and vector trimming.
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